midrc_react package

Subpackages

• midrc_react.core package
  • Submodules
  • midrc_react.core.aggregate_jsd_calc module
    • calc_aggregate_jsd_at_date()
    • calc_jsd_by_features()
    • calc_jsd_by_features_2df()
    • calc_jsd_from_counts_dict()
  • midrc_react.core.cucconi module
    • CucconiMultisampleResult
      • CucconiMultisampleResult.pvalue
      • CucconiMultisampleResult.statistic
    • CucconiResult
      • CucconiResult.pvalue
      • CucconiResult.statistic
    • cucconi_multisample_test()
    • cucconi_test()
  • midrc_react.core.data_preprocessing module
    • bin_dataframe_column()
    • combine_datasets_from_list()
  • midrc_react.core.datetimetools module
    • convert_date_to_milliseconds()
    • get_date_parts()
    • numpy_datetime64_to_qdate()
    • pandas_date_to_qdate()
  • midrc_react.core.excel_layout module
    • DataSheet
      • DataSheet.__init__()
      • DataSheet.columns
      • DataSheet.create_custom_age_columns()
      • DataSheet.data_columns
      • DataSheet.df
    • DataSource
      • DataSource.__init__()
      • DataSource.apply_numeric_column_adjustments()
      • DataSource.build_data_frames_from_content()
      • DataSource.build_data_frames_from_csv()
      • DataSource.build_data_frames_from_file()
      • DataSource.calculate_cumulative_sums()
      • DataSource.create_sheets()
      • DataSource.create_sheets_from_df()
      • DataSource.load_plugin()
      • DataSource.numeric_cols
      • DataSource.raw_columns_to_use()
  • midrc_react.core.excelparse module
    • excelparse()
  • midrc_react.core.famd_calc module
    • adjust_bin_widths()
    • calc_famd_df()
    • calc_famd_distances()
    • calc_famd_ks2_at_date()
    • calc_famd_ks2_at_dates()
    • fit_famd()
    • preprocess_data_for_famd()
  • midrc_react.core.jsdconfig module
    • JSDConfig
      • JSDConfig.__init__()
      • JSDConfig.__post_init__()
      • JSDConfig.data
      • JSDConfig.filename
      • JSDConfig.set_filename()
  • midrc_react.core.jsdcontroller module
    • JSDController
      • JSDController.NOT_REPORTED_COLUMN_NAME
      • JSDController.__init__()
      • JSDController.category_changed()
      • JSDController.connect_signals()
      • JSDController.fileChangedSignal
      • JSDController.file_changed()
      • JSDController.get_categories()
      • JSDController.get_cols_to_use_for_jsd_calc()
      • JSDController.get_file_sheets_from_index()
      • JSDController.get_spider_plot_values()
      • JSDController.get_timeline_data()
      • JSDController.initialize()
      • JSDController.jsd_model
      • JSDController.jsd_view
      • JSDController.modelChanged
      • JSDController.num_categories
      • JSDController.update_category_plots()
      • JSDController.update_file_based_charts()
    • calculate_jsd()
    • remove_elements_less_than_from_sorted_list()
  • midrc_react.core.jsdmodel module
    • JSDTableModel
      • JSDTableModel.HEADER_MAPPING
      • JSDTableModel.__init__()
      • JSDTableModel.add_color_mapping()
      • JSDTableModel.add_data_source()
      • JSDTableModel.clear_color_mapping()
      • JSDTableModel.columnCount()
      • JSDTableModel.column_infos
      • JSDTableModel.data()
      • JSDTableModel.data_source_added
      • JSDTableModel.flags()
      • JSDTableModel.headerData()
      • JSDTableModel.input_data
      • JSDTableModel.rowCount()
      • JSDTableModel.setData()
      • JSDTableModel.update_input_data()
  • midrc_react.core.numeric_distances module
    • build_histogram_dict()
    • calc_cucconi_by_feature()
    • calc_distances_via_df()
    • calc_ks2_samp_by_feature()
    • calc_numerical_metric_by_feature()
    • calc_wasserstein_by_feature()
    • generate_histogram()
    • get_supported_scaling_methods()
    • scale_feature()
    • scale_values()
  • Module contents
• midrc_react.gui package
  • Subpackages
    • midrc_react.gui.common package
      • Submodules
      • midrc_react.gui.common.file_upload module
        • process_file_upload()
      • midrc_react.gui.common.jsdview_base module
        • GroupBoxData
          • GroupBoxData.append_file_info()
          • GroupBoxData.category_info
          • GroupBoxData.file_infos
          • GroupBoxData.get_category_info()
          • GroupBoxData.get_file_infos()
          • GroupBoxData.update_category_index()
          • GroupBoxData.update_category_list()
          • GroupBoxData.update_category_text()
        • JsdViewBase
          • JsdViewBase.__init__()
          • JsdViewBase.add_data_source
          • JsdViewBase.dataselectiongroupbox
          • JsdViewBase.open_excel_file()
          • JsdViewBase.update_area_chart()
          • JsdViewBase.update_jsd_timeline_plot()
          • JsdViewBase.update_pie_chart_dock()
          • JsdViewBase.update_spider_chart()
          • JsdViewBase.update_view_on_controller_initialization
      • midrc_react.gui.common.plot_utils module
        • create_stacked_area_figure()
        • prepare_area_chart_data()
      • midrc_react.gui.common.utils module
        • create_data_source_dict()
        • create_file_info()
        • get_common_categories()
      • Module contents
    • midrc_react.gui.dash package
      • Submodules
      • midrc_react.gui.dash.dataselectiongroupbox module
        • DataSelectionGroupBox
          • DataSelectionGroupBox.category_combobox
          • DataSelectionGroupBox.display()
          • DataSelectionGroupBox.file_comboboxes
          • DataSelectionGroupBox.on_category_changed()
          • DataSelectionGroupBox.on_file_selection_changed()
          • DataSelectionGroupBox.on_num_fileboxes_changed()
          • DataSelectionGroupBox.update_category_combobox()
          • DataSelectionGroupBox.update_filebox_layout()
      • midrc_react.gui.dash.jsdview_dash module
        • JSDViewDash
          • JSDViewDash.__init__()
          • JSDViewDash.get_categories()
          • JSDViewDash.handle_excel_file_uploaded()
          • JSDViewDash.run()
          • JSDViewDash.setup_layout()
          • JSDViewDash.update_area_chart()
          • JSDViewDash.update_timeline_chart()
      • Module contents
    • midrc_react.gui.ipython package
      • Submodules
      • midrc_react.gui.ipython.dataselectiongroupbox module
        • DataSelectionGroupBox
          • DataSelectionGroupBox.__init__()
          • DataSelectionGroupBox.category_changed
          • DataSelectionGroupBox.change_number_of_fileboxes()
          • DataSelectionGroupBox.display()
          • DataSelectionGroupBox.excel_file_uploaded
          • DataSelectionGroupBox.file_comboboxes
          • DataSelectionGroupBox.file_selection_changed
          • DataSelectionGroupBox.on_category_changed()
          • DataSelectionGroupBox.on_file_selection_changed()
          • DataSelectionGroupBox.on_num_fileboxes_changed()
          • DataSelectionGroupBox.update_category_combobox()
          • DataSelectionGroupBox.update_file_comboboxes()
      • midrc_react.gui.ipython.jsdview_ipython module
        • JsdViewIPython
          • JsdViewIPython.__init__()
          • JsdViewIPython.jsd_timeline_plot_update
          • JsdViewIPython.open_excel_file()
          • JsdViewIPython.update_area_chart()
          • JsdViewIPython.update_area_chart_interactive_plotly()
          • JsdViewIPython.update_jsd_timeline_plot()
          • JsdViewIPython.update_jsd_timeline_plot_interactive()
          • JsdViewIPython.update_jsd_timeline_plot_interactive_plotly()
      • Module contents
    • midrc_react.gui.pyside6 package
      • Submodules
      • midrc_react.gui.pyside6.columnselectordialog module
        • ColumnSelectorDialog
          • ColumnSelectorDialog.__init__()
          • ColumnSelectorDialog.get_selected_columns()
        • NumericColumnSelectorDialog
          • NumericColumnSelectorDialog.__init__()
          • NumericColumnSelectorDialog.get_selected_columns_with_bins()
          • NumericColumnSelectorDialog.toggle_inputs()
      • midrc_react.gui.pyside6.copyabletableview module
        • CopyableTableView
          • CopyableTableView.__init__()
          • CopyableTableView.copy_selection()
          • CopyableTableView.eventFilter()
      • midrc_react.gui.pyside6.dataselectiongroupbox module
        • JsdDataSelectionGroupBox
          • JsdDataSelectionGroupBox.NUM_DEFAULT_DATA_ITEMS
          • JsdDataSelectionGroupBox.__init__()
          • JsdDataSelectionGroupBox.add_file_combobox_to_layout()
          • JsdDataSelectionGroupBox.add_file_to_comboboxes()
          • JsdDataSelectionGroupBox.file_checkbox_state_changed
          • JsdDataSelectionGroupBox.get_category_info()
          • JsdDataSelectionGroupBox.get_file_infos()
          • JsdDataSelectionGroupBox.num_data_items_changed
          • JsdDataSelectionGroupBox.remove_file_combobox_from_layout()
          • JsdDataSelectionGroupBox.set_layout()
          • JsdDataSelectionGroupBox.set_num_data_items()
          • JsdDataSelectionGroupBox.update_category_list()
      • midrc_react.gui.pyside6.file_open_dialogs module
        • BaseFileOptionsDialog
          • BaseFileOptionsDialog.__init__()
        • CSVTSVOptionsDialog
          • CSVTSVOptionsDialog.__init__()
          • CSVTSVOptionsDialog.accept()
          • CSVTSVOptionsDialog.get_data()
          • CSVTSVOptionsDialog.load_defaults()
          • CSVTSVOptionsDialog.open_column_selector()
          • CSVTSVOptionsDialog.open_numeric_column_selector()
          • CSVTSVOptionsDialog.process_plugin()
          • CSVTSVOptionsDialog.save_defaults()
        • FileOptionsDialog
          • FileOptionsDialog.__init__()
        • get_csv_tsv_columns()
        • open_csv_tsv_file_dialog()
        • open_excel_file_dialog()
        • open_yaml_input_dialog()
        • represent_list()
      • midrc_react.gui.pyside6.grabbablewidget module
        • GrabbableChartView
          • GrabbableChartView.__init__()
          • GrabbableChartView.save_chart_to_disk()
        • GrabbableWidgetMixin
          • GrabbableWidgetMixin.DATE_TIME_FORMAT
          • GrabbableWidgetMixin.DEFAULT_SAVE_FILE_PREFIX
          • GrabbableWidgetMixin.__init__()
          • GrabbableWidgetMixin.copy_to_clipboard()
          • GrabbableWidgetMixin.create_directory()
          • GrabbableWidgetMixin.default_filename()
          • GrabbableWidgetMixin.eventFilter()
          • GrabbableWidgetMixin.save_high_res_to_disk()
          • GrabbableWidgetMixin.save_to_disk()
          • GrabbableWidgetMixin.show_context_menu()
        • SaveWidgetAsImageDialog
          • SaveWidgetAsImageDialog.WINDOW_HEIGHT
          • SaveWidgetAsImageDialog.WINDOW_TITLE
          • SaveWidgetAsImageDialog.WINDOW_WIDTH
          • SaveWidgetAsImageDialog.__init__()
          • SaveWidgetAsImageDialog.cancel_save()
          • SaveWidgetAsImageDialog.closeEvent()
          • SaveWidgetAsImageDialog.image
          • SaveWidgetAsImageDialog.save_image()
      • midrc_react.gui.pyside6.jsdview module
        • JsdChart
          • JsdChart.__init__()
        • JsdWindow
          • JsdWindow.DOCK_TITLES
          • JsdWindow.WINDOW_TITLE
          • JsdWindow.__init__()
          • JsdWindow.add_area_chart_view()
          • JsdWindow.add_data_source
          • JsdWindow.add_spider_chart_view()
          • JsdWindow.adjust_number_of_files_to_compare()
          • JsdWindow.create_main_layout()
          • JsdWindow.create_menu_bar
          • JsdWindow.create_pie_chart_dock_widget()
          • JsdWindow.create_spider_chart_dock_widget()
          • JsdWindow.create_table_dock_widget()
          • JsdWindow.dataselectiongroupbox
          • JsdWindow.open_csv_tsv_file_dialog()
          • JsdWindow.open_excel_file_dialog()
          • JsdWindow.open_yaml_input_dialog()
          • JsdWindow.populate_dock_widget_menu()
          • JsdWindow.reset_minimum_sizes()
          • JsdWindow.set_animation_options()
          • JsdWindow.set_default_widget_sizes()
          • JsdWindow.update_area_chart()
          • JsdWindow.update_jsd_timeline_plot()
          • JsdWindow.update_pie_chart_dock()
          • JsdWindow.update_spider_chart()
          • JsdWindow.update_spider_chart_title()
        • clear_layout()
      • midrc_react.gui.pyside6.launch_react module
        • SplashScreen
          • SplashScreen.BACKGROUND_COLOR
          • SplashScreen.FONT_FAMILY
          • SplashScreen.FONT_SIZE
          • SplashScreen.SPLASH_HEIGHT
          • SplashScreen.SPLASH_SCREEN_MESSAGE
          • SplashScreen.SPLASH_WIDTH
          • SplashScreen.__init__()
        • launch_react()
      • Module contents
  • Module contents
• midrc_react.plugins package
  • Submodules
  • midrc_react.plugins.midrc_tsv_loader module
    • adjust_age()
    • adjust_column_names()
    • combine_race_ethnicity()
    • extract_earliest_date()
    • preprocess_data()
    • process_dataframe()
    • process_dataframe_to_dataframe()
    • process_tsv_to_dataframe()
    • process_tsv_to_tsv()
  • Module contents

Module contents